Familyverse Timeline

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Cannibalism jokes and resfeber, Molly and Sherlock (several weeks after 2x03)
A long-overdue kiss, Molly and Sherlock (mid-3x03; Christmas Eve/Christmas Day)
Promising beginnings, Molly and Sherlock (immediately post-3x03)
A frank talk, Molly and Mycroft (about three months after 3x03)
Illness and another evolving relationship, Anthea and Mycroft (spanning post-3x03 to the end of the counterattack log)
Discovery, naming, and birth of Matthew John William Hooper, Molly and Sherlock et al (six to eight months after 3x03)
Matthew meets his uncle, Molly, Mycroft, and Sherlock (five days later)
Attack and subsequent counterattack, Anthea, Ferox, Molly, and Sherlock et al (two years later)
Breakfast and aftermath, Anthea, Mycroft, and Sherlock (morning after)
Discovery of twins and a partnership formalized, Molly, Mycroft, and Sherlock et al (four weeks/six weeks later)
Coming to an arrangement, Anthea and Mycroft (shortly after the wedding??)